Variant report
| Variant | rs1343191 |
|---|---|
| Chromosome Location | chrX:74066604-74066605 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs2209549 | 1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap] |
| rs2211463 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs2676490 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap] |
| rs5937900 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap] |
| rs5981700 | 0.81[MEX][hapmap] |
| rs6647073 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap] |
| rs6647074 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap] |
| rs6647520 | 0.81[MEX][hapmap] |
| rs6647537 | 0.87[MEX][hapmap] |
| rs6647577 | 0.81[MEX][hapmap] |
| rs6647579 | 0.81[MEX][hapmap] |
| rs6647582 | 0.81[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916758 | chrX:73546406-74420929 | Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | esv3395402 | chrX:74046980-74069464 | Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
