Variant report

Variant	rs2209549
Chromosome Location	chrX:73958629-73958630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1343191	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs2211463	0.84[CEU][hapmap]
rs2676490	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs5937900	0.84[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs5981700	0.81[MEX][hapmap]
rs6647073	0.84[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap]
rs6647074	0.84[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap]
rs6647520	0.81[MEX][hapmap]
rs6647537	0.87[MEX][hapmap]
rs6647577	0.81[MEX][hapmap]
rs6647579	0.81[MEX][hapmap]
rs6647582	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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