Variant report

Variant	rs5981700
Chromosome Location	chrX:74031187-74031188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12689586	0.84[CHB][hapmap]
rs1343191	0.81[MEX][hapmap]
rs1361828	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1573169	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16988567	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16991794	0.84[CHB][hapmap]
rs2153984	1.00[CHB][hapmap]
rs2209549	0.81[MEX][hapmap]
rs2226174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs4892530	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5937900	0.93[MEX][hapmap]
rs5981655	0.84[CHB][hapmap]
rs6607490	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6607496	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647073	0.94[MEX][hapmap]
rs6647074	0.94[MEX][hapmap]
rs6647077	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6647520	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs6647521	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs6647531	1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[MEX][hapmap]
rs6647537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6647563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs6647565	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs6647567	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647568	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647569	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647571	1.00[CEU][hapmap]
rs6647574	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs6647579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs6647582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs6647583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74029400-74031800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chrX:74030200-74031200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chrX:74030400-74034000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chrX:74030600-74031600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chrX:74031000-74031200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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