Variant report
| Variant | rs16991794 |
|---|---|
| Chromosome Location | chrX:73844445-73844446 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chrX:73832982..73836312-chrX:73842775..73845741,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000131263 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs12689586 | 1.00[CHB][hapmap] |
| rs3747436 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs5981287 | 1.00[CHB][hapmap] |
| rs5981288 | 1.00[CHB][hapmap];0.86[YRI][hapmap] |
| rs5981655 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs5981700 | 0.84[CHB][hapmap] |
| rs6647520 | 0.84[CHB][hapmap] |
| rs6647521 | 0.84[CHB][hapmap] |
| rs6647531 | 0.84[CHB][hapmap] |
| rs6647537 | 0.84[CHB][hapmap] |
| rs7053631 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs7056769 | 1.00[CHB][hapmap] |
| rs7892560 | 1.00[CHB][hapmap];0.87[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916758 | chrX:73546406-74420929 | Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv532878 | chrX:73603325-74057587 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv521472 | chrX:73656415-73878101 | Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
