Variant report

Variant	rs7892560
Chromosome Location	chrX:73822603-73822604
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:73819960..73822642-chrX:73832307..73835331,3	MCF-7	breast:
2	chrX:73820095..73823640-chrX:73831916..73835446,3	K562	blood:

Variant related genes	Relation type
ENSG00000131263	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12689586	1.00[CHB][hapmap]
rs16991794	1.00[CHB][hapmap];0.87[YRI][hapmap]
rs3747436	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs5981287	1.00[CHB][hapmap]
rs5981288	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5981655	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs6647520	0.84[CHB][hapmap]
rs6647521	0.84[CHB][hapmap]
rs6647531	0.84[CHB][hapmap]
rs6647537	0.84[CHB][hapmap]
rs7053631	1.00[CHB][hapmap];0.88[YRI][hapmap]
rs7056769	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv521472	chrX:73656415-73878101	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73798400-73832400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chrX:73800000-73833000	Weak transcription	Lung	lung
3	chrX:73801800-73832200	Weak transcription	NHLF	lung
4	chrX:73803400-73831400	Weak transcription	HMEC	breast
5	chrX:73803400-73833000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chrX:73806000-73833000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chrX:73806200-73824800	Weak transcription	Stomach Mucosa	stomach
8	chrX:73807400-73823000	Weak transcription	Psoas Muscle	Psoas
9	chrX:73810200-73833200	Weak transcription	Colonic Mucosa	Colon
10	chrX:73812200-73831800	Weak transcription	Brain Germinal Matrix	brain
11	chrX:73812200-73832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chrX:73812200-73832400	Weak transcription	Fetal Heart	heart
13	chrX:73812200-73832400	Weak transcription	K562	blood
14	chrX:73812200-73832600	Weak transcription	Right Ventricle	heart
15	chrX:73812200-73833000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chrX:73812200-73833200	Weak transcription	Pancreas	Pancrea
17	chrX:73812400-73832200	Weak transcription	Primary hematopoietic stem cells	blood
18	chrX:73812400-73832800	Weak transcription	Brain Angular Gyrus	brain
19	chrX:73812400-73833200	Weak transcription	Esophagus	oesophagus
20	chrX:73812400-73833200	Weak transcription	Gastric	stomach
21	chrX:73812600-73833000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chrX:73812600-73833200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chrX:73812600-73833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chrX:73812800-73831400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chrX:73812800-73832600	Weak transcription	Rectal Smooth Muscle	rectum
26	chrX:73812800-73833600	Weak transcription	Spleen	Spleen
27	chrX:73813800-73823200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chrX:73813800-73823400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chrX:73813800-73824800	Weak transcription	Brain Hippocampus Middle	brain
30	chrX:73813800-73831400	Weak transcription	HUVEC	blood vessel
31	chrX:73813800-73831800	Weak transcription	Primary B cells from cord blood	blood
32	chrX:73813800-73832600	Weak transcription	Thymus	Thymus
33	chrX:73814000-73832600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chrX:73814000-73833000	Weak transcription	Brain Anterior Caudate	brain
35	chrX:73814200-73822800	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chrX:73814200-73831400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chrX:73814200-73832000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chrX:73814400-73825000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chrX:73814400-73825400	Weak transcription	HepG2	liver
40	chrX:73814400-73828400	Weak transcription	NH-A	brain
41	chrX:73814400-73831200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chrX:73814400-73831800	Weak transcription	Duodenum Mucosa	Duodenum
43	chrX:73814600-73824600	Weak transcription	Primary T cells from cord blood	blood
44	chrX:73815000-73826600	Weak transcription	Left Ventricle	heart
45	chrX:73815200-73832200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chrX:73815200-73832600	Weak transcription	NHDF-Ad	bronchial
47	chrX:73815200-73832800	Weak transcription	Fetal Intestine Large	intestine
48	chrX:73815200-73833000	Weak transcription	Placenta	Placenta
49	chrX:73815400-73831400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chrX:73815600-73828000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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