Variant report

Variant	rs5981655
Chromosome Location	chrX:73843226-73843227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12689586	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs16991794	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs16991813	0.90[GIH][hapmap]
rs3747436	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5981287	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap]
rs5981288	1.00[CHB][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs5981700	0.84[CHB][hapmap]
rs6647520	0.84[CHB][hapmap]
rs6647521	0.84[CHB][hapmap]
rs6647531	0.84[CHB][hapmap]
rs6647537	0.84[CHB][hapmap]
rs7053631	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7056769	1.00[CHB][hapmap]
rs7892560	1.00[CHB][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv521472	chrX:73656415-73878101	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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