Variant report
| Variant | rs6647531 |
|---|---|
| Chromosome Location | chrX:73988338-73988339 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs12689586 | 0.84[CHB][hapmap] |
| rs1361828 | 1.00[CHB][hapmap] |
| rs1573169 | 1.00[CHB][hapmap] |
| rs16988567 | 1.00[CHB][hapmap] |
| rs16991794 | 0.84[CHB][hapmap] |
| rs2153984 | 1.00[CHB][hapmap] |
| rs2226174 | 1.00[CHB][hapmap];0.89[CHD][hapmap] |
| rs3747436 | 0.84[CHB][hapmap] |
| rs4892530 | 1.00[CHB][hapmap] |
| rs5937900 | 0.81[MEX][hapmap] |
| rs5981287 | 0.82[CHB][hapmap] |
| rs5981288 | 0.84[CHB][hapmap] |
| rs5981655 | 0.84[CHB][hapmap] |
| rs5981700 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[MEX][hapmap] |
| rs6607490 | 1.00[CHB][hapmap] |
| rs6607496 | 1.00[CHB][hapmap] |
| rs6647073 | 0.81[MEX][hapmap] |
| rs6647074 | 0.81[MEX][hapmap] |
| rs6647077 | 1.00[CHB][hapmap] |
| rs6647520 | 1.00[CHB][hapmap];0.89[CHD][hapmap] |
| rs6647521 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[MEX][hapmap] |
| rs6647537 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.81[MEX][hapmap] |
| rs6647563 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[MEX][hapmap] |
| rs6647565 | 1.00[CHB][hapmap] |
| rs6647566 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[MEX][hapmap] |
| rs6647567 | 1.00[CHB][hapmap] |
| rs6647568 | 1.00[CHB][hapmap] |
| rs6647569 | 1.00[CHB][hapmap] |
| rs6647574 | 1.00[CHB][hapmap] |
| rs6647577 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[MEX][hapmap] |
| rs6647579 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[MEX][hapmap] |
| rs6647582 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[MEX][hapmap] |
| rs6647583 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[MEX][hapmap] |
| rs7053631 | 0.84[CHB][hapmap] |
| rs7056769 | 0.84[CHB][hapmap] |
| rs7892560 | 0.84[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916758 | chrX:73546406-74420929 | Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv532878 | chrX:73603325-74057587 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6647531 | PHYHD1 | trans | lymphoblastoid | seeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
