Variant report

Variant	rs6647077
Chromosome Location	chrX:74111360-74111361
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:74108699..74111647-chrX:74111767..74113856,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12689586	0.82[CHB][hapmap]
rs1361828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1573169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs16988567	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2153984	1.00[CHB][hapmap]
rs2226174	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[YRI][hapmap]
rs4892530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4892539	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs5981700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6607490	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6607496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6647531	1.00[CHB][hapmap]
rs6647537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6647563	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6647565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6647566	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[YRI][hapmap]
rs6647567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6647568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6647569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6647571	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6647574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6647577	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[YRI][hapmap]
rs6647579	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[YRI][hapmap]
rs6647582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[YRI][hapmap]
rs6647583	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74110400-74112800	Enhancers	GM12878-XiMat	blood
2	chrX:74110800-74111600	Enhancers	Fetal Brain Male	brain
3	chrX:74111000-74112800	Enhancers	Brain Germinal Matrix	brain
4	chrX:74111200-74111800	Enhancers	Cortex derived primary cultured neurospheres	brain

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