Variant report

Variant	rs5981287
Chromosome Location	chrX:73810000-73810001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:73809458..73813064-chrX:73832812..73834574,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131263	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12689586	1.00[CHB][hapmap];0.88[GIH][hapmap]
rs16991794	1.00[CHB][hapmap]
rs16991813	0.88[GIH][hapmap]
rs3747436	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap]
rs5981288	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs5981655	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap]
rs6647520	0.82[CHB][hapmap]
rs6647521	0.82[CHB][hapmap]
rs6647531	0.82[CHB][hapmap]
rs6647537	0.82[CHB][hapmap]
rs7053631	1.00[CHB][hapmap]
rs7056769	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7892560	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv521472	chrX:73656415-73878101	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73771800-73811600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chrX:73790800-73811600	Weak transcription	Primary hematopoietic stem cells	blood
3	chrX:73795800-73811600	Weak transcription	Left Ventricle	heart
4	chrX:73796400-73811600	Weak transcription	Primary T cells from cord blood	blood
5	chrX:73796800-73818600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chrX:73798400-73832400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chrX:73799000-73811400	Weak transcription	Thymus	Thymus
8	chrX:73799400-73810800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chrX:73800000-73812800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chrX:73800000-73833000	Weak transcription	Lung	lung
11	chrX:73800200-73812800	Weak transcription	NHDF-Ad	bronchial
12	chrX:73800400-73811400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chrX:73800600-73811800	Weak transcription	HSMMtube	muscle
14	chrX:73801000-73811200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chrX:73801200-73810400	Weak transcription	Adipose Nuclei	Adipose
16	chrX:73801400-73810000	Weak transcription	Fetal Thymus	thymus
17	chrX:73801400-73811400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chrX:73801400-73811600	Weak transcription	Gastric	stomach
19	chrX:73801400-73811600	Weak transcription	Stomach Smooth Muscle	stomach
20	chrX:73801400-73822400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chrX:73801600-73810000	Weak transcription	NH-A	brain
22	chrX:73801600-73811200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chrX:73801600-73811400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chrX:73801600-73811400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chrX:73801600-73818000	Weak transcription	Aorta	Aorta
26	chrX:73801800-73832200	Weak transcription	NHLF	lung
27	chrX:73802000-73810800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chrX:73802000-73812000	Weak transcription	Brain Substantia Nigra	brain
29	chrX:73802400-73811600	Weak transcription	Pancreas	Pancrea
30	chrX:73802600-73816400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chrX:73802800-73811400	Weak transcription	Fetal Stomach	stomach
32	chrX:73803000-73811600	Weak transcription	Primary B cells from cord blood	blood
33	chrX:73803000-73819200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chrX:73803200-73811600	Weak transcription	Esophagus	oesophagus
35	chrX:73803200-73813400	Weak transcription	Brain Anterior Caudate	brain
36	chrX:73803400-73831400	Weak transcription	HMEC	breast
37	chrX:73803400-73833000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chrX:73803800-73811600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chrX:73804200-73811400	Weak transcription	Fetal Lung	lung
40	chrX:73804200-73811400	Weak transcription	Placenta	Placenta
41	chrX:73804200-73811400	Weak transcription	GM12878-XiMat	blood
42	chrX:73804200-73820600	Strong transcription	Dnd41	blood
43	chrX:73804600-73811800	Weak transcription	HUVEC	blood vessel
44	chrX:73805000-73811400	Weak transcription	Fetal Muscle Leg	muscle
45	chrX:73805800-73816200	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chrX:73805800-73820200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chrX:73806000-73810600	Weak transcription	Primary B cells from peripheral blood	blood
48	chrX:73806000-73811200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chrX:73806000-73811600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chrX:73806000-73811800	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links