Variant report
| Variant | rs1343240 |
|---|---|
| Chromosome Location | chr6:82086802-82086803 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1277332 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1343256 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1343258 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1838312 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2099957 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2120536 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2588031 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4706141 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4706142 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4706885 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs502733 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs537533 | 1.00[AFR][1000 genomes];0.80[EUR][1000 genomes] |
| rs6454216 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6914665 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6920069 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7451367 | 0.83[ASN][1000 genomes] |
| rs7738157 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7770902 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9294218 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9341877 | 0.88[EUR][1000 genomes] |
| rs9344161 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9353002 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9443897 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs989684 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604087 | chr6:81792413-82326091 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032655 | chr6:81942397-82225830 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv886328 | chr6:82036764-82120647 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:82086400-82087000 | Enhancers | Fetal Heart | heart |
| 2 | chr6:82086600-82087200 | Enhancers | HepG2 | liver |
