Variant report

Variant	rs9353002
Chromosome Location	chr6:82085847-82085848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1277332	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1343240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1343256	0.97[EUR][1000 genomes]
rs1343258	0.97[EUR][1000 genomes]
rs1838312	0.97[EUR][1000 genomes]
rs2099957	0.97[EUR][1000 genomes]
rs2120536	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588031	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4706141	1.00[EUR][1000 genomes]
rs4706142	1.00[EUR][1000 genomes]
rs4706885	0.97[EUR][1000 genomes]
rs502733	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs537533	0.80[EUR][1000 genomes]
rs6454216	0.95[EUR][1000 genomes]
rs6914665	0.97[EUR][1000 genomes]
rs6920069	0.97[EUR][1000 genomes]
rs7451367	0.83[ASN][1000 genomes]
rs7738157	0.97[EUR][1000 genomes]
rs7770902	0.97[EUR][1000 genomes]
rs9294218	1.00[EUR][1000 genomes]
rs9341877	0.88[EUR][1000 genomes]
rs9344161	0.97[EUR][1000 genomes]
rs9443897	0.97[EUR][1000 genomes]
rs989684	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886328	chr6:82036764-82120647	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82082200-82086400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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