Variant report

Variant	rs502733
Chromosome Location	chr6:82160283-82160284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1277332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1343240	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1343256	0.85[EUR][1000 genomes]
rs1343258	0.85[EUR][1000 genomes]
rs1838312	0.85[EUR][1000 genomes]
rs2099957	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2120536	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2588031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706141	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4706142	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4706885	0.85[EUR][1000 genomes]
rs537533	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6454216	0.83[EUR][1000 genomes]
rs6914665	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6920069	0.85[EUR][1000 genomes]
rs7451367	1.00[ASN][1000 genomes]
rs7738157	0.85[EUR][1000 genomes]
rs7770902	0.85[EUR][1000 genomes]
rs9294218	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9344161	0.85[EUR][1000 genomes]
rs9353002	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9443897	0.85[EUR][1000 genomes]
rs989684	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv34899	chr6:82090758-82161121	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv2757183	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2759450	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv7935	chr6:82136511-82174968	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3475143	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3475144	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv442004	chr6:82147124-82171606	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv823765	chr6:82152910-82174129	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv2756172	chr6:82155881-82161081	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
12	nsv432937	chr6:82155881-82161081	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82159200-82162400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:82159400-82162000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:82159600-82160800	Enhancers	Osteobl	bone
4	chr6:82159600-82162000	Enhancers	NHDF-Ad	bronchial
5	chr6:82159600-82162200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:82159800-82160400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:82159800-82162400	Enhancers	Hela-S3	cervix
8	chr6:82160000-82160400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:82160000-82160400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:82160000-82160400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:82160000-82160400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:82160000-82160400	Enhancers	NHLF	lung
13	chr6:82160000-82160600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:82160000-82161600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:82160000-82161600	Enhancers	Left Ventricle	heart
16	chr6:82160000-82162000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:82160200-82160400	Enhancers	Fetal Heart	heart
18	chr6:82160200-82160400	Enhancers	NH-A	brain
19	chr6:82160200-82160600	Weak transcription	Stomach Mucosa	stomach

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