Variant report

Variant	rs13432479
Chromosome Location	chr2:63347417-63347418
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10176805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10180262	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187907	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10199938	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10203623	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10203845	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11125951	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11675647	0.82[YRI][hapmap]
rs12713478	0.82[YRI][hapmap]
rs13402830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13403570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13408152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13408991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13419820	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13422328	0.82[YRI][hapmap]
rs13423930	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13424984	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13426053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13431266	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13431765	0.82[YRI][hapmap]
rs1517407	0.82[YRI][hapmap]
rs2030188	0.82[YRI][hapmap]
rs2699393	0.82[YRI][hapmap]
rs55650545	1.00[EUR][1000 genomes]
rs57002163	1.00[EUR][1000 genomes]
rs57127049	1.00[EUR][1000 genomes]
rs57320842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58171425	1.00[EUR][1000 genomes]
rs58523998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58718173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59234039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59718895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59831223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60215951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60935023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61271282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61378194	1.00[EUR][1000 genomes]
rs6709115	0.82[YRI][hapmap]
rs6713500	0.82[YRI][hapmap]
rs6718609	0.82[YRI][hapmap]
rs6728740	1.00[EUR][1000 genomes]
rs6754557	1.00[EUR][1000 genomes]
rs72888969	1.00[EUR][1000 genomes]
rs72890504	1.00[EUR][1000 genomes]
rs72890505	1.00[EUR][1000 genomes]
rs72890506	1.00[EUR][1000 genomes]
rs7599037	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1006848	chr2:63061816-63631407	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2756598	chr2:63085848-63491438	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv3340700	chr2:63127412-63534998	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1004678	chr2:63230722-63562484	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63342600-63349600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:63343600-63349600	Weak transcription	Primary T cells from cord blood	blood
3	chr2:63344200-63348000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:63344400-63350600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:63344400-63360400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:63344800-63350200	Weak transcription	Fetal Stomach	stomach
7	chr2:63345800-63348000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:63346000-63348600	Weak transcription	Right Ventricle	heart
9	chr2:63346400-63348000	Weak transcription	Fetal Brain Female	brain
10	chr2:63346400-63348200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:63346400-63348200	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:63346400-63350000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:63346600-63347800	Weak transcription	Aorta	Aorta
14	chr2:63346600-63348000	Weak transcription	Adipose Nuclei	Adipose
15	chr2:63346600-63348600	Weak transcription	Ovary	ovary
16	chr2:63346600-63399200	Weak transcription	Left Ventricle	heart
17	chr2:63346800-63348200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:63346800-63348400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:63347200-63347600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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