Variant report

Variant	rs58718173
Chromosome Location	chr2:63532433-63532434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10176805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10180262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10199938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10203623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10203845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11125951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13402830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13403570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13408152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13408991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13419820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13423930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13424984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13426053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13431266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13432479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027850	1.00[EUR][1000 genomes]
rs17027873	1.00[EUR][1000 genomes]
rs17027894	1.00[EUR][1000 genomes]
rs17027897	1.00[EUR][1000 genomes]
rs17027899	1.00[EUR][1000 genomes]
rs17027901	1.00[EUR][1000 genomes]
rs17027902	1.00[EUR][1000 genomes]
rs17027903	1.00[EUR][1000 genomes]
rs17027906	1.00[EUR][1000 genomes]
rs17027922	1.00[EUR][1000 genomes]
rs17027970	1.00[EUR][1000 genomes]
rs36064846	0.88[AFR][1000 genomes]
rs56778186	1.00[EUR][1000 genomes]
rs57272995	1.00[EUR][1000 genomes]
rs57320842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57360299	1.00[EUR][1000 genomes]
rs57518057	1.00[EUR][1000 genomes]
rs57840658	1.00[EUR][1000 genomes]
rs58523998	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58695205	1.00[EUR][1000 genomes]
rs59234039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59718895	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59973565	1.00[EUR][1000 genomes]
rs60215951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60413056	1.00[EUR][1000 genomes]
rs60935023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61271282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1006848	chr2:63061816-63631407	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3340700	chr2:63127412-63534998	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1004678	chr2:63230722-63562484	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv535768	chr2:63413596-63631407	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1009191	chr2:63473443-63578508	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv834241	chr2:63490262-63668205	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63524000-63532600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:63525800-63532600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr2:63530600-63545800	Weak transcription	Primary T cells from cord blood	blood
4	chr2:63530800-63532800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:63530800-63538400	Weak transcription	Pancreas	Pancrea
6	chr2:63530800-63541800	Weak transcription	Primary B cells from cord blood	blood
7	chr2:63531000-63541800	Weak transcription	Brain Angular Gyrus	brain
8	chr2:63531000-63571400	Weak transcription	Left Ventricle	heart
9	chr2:63531800-63537200	Weak transcription	Dnd41	blood
10	chr2:63532200-63543800	Weak transcription	Thymus	Thymus
11	chr2:63532200-63549800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:63532400-63532600	Strong transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links