Variant report

Variant	rs13431266
Chromosome Location	chr2:63491253-63491254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10169292	0.91[YRI][hapmap]
rs10176805	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10180262	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187907	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10199938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10203623	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10203845	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11125951	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11675647	0.91[YRI][hapmap]
rs12713478	0.91[YRI][hapmap]
rs13402830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13403570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13408152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13408991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13419820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13422328	0.82[YRI][hapmap]
rs13423930	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13424984	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13426053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13431765	0.82[YRI][hapmap]
rs13432479	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1517401	0.81[YRI][hapmap]
rs1517407	0.82[YRI][hapmap]
rs17027850	1.00[EUR][1000 genomes]
rs17027873	1.00[EUR][1000 genomes]
rs17027894	1.00[EUR][1000 genomes]
rs17027897	1.00[EUR][1000 genomes]
rs17027899	0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs17027901	1.00[EUR][1000 genomes]
rs17027902	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs17027903	1.00[EUR][1000 genomes]
rs17027904	0.81[YRI][hapmap]
rs17027906	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs17027922	1.00[EUR][1000 genomes]
rs2030188	0.91[YRI][hapmap]
rs2176416	0.91[YRI][hapmap]
rs2176417	0.91[YRI][hapmap]
rs2421886	0.91[YRI][hapmap]
rs2699393	0.82[YRI][hapmap]
rs57002163	1.00[EUR][1000 genomes]
rs57272995	1.00[EUR][1000 genomes]
rs57320842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57360299	1.00[EUR][1000 genomes]
rs57518057	1.00[EUR][1000 genomes]
rs58523998	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58695205	1.00[EUR][1000 genomes]
rs58718173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59234039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59718895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59973565	1.00[EUR][1000 genomes]
rs60215951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60413056	1.00[EUR][1000 genomes]
rs60935023	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61271282	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6709115	0.91[YRI][hapmap]
rs6713500	0.91[YRI][hapmap]
rs6717060	0.91[YRI][hapmap]
rs6718609	0.91[YRI][hapmap]
rs6754557	1.00[EUR][1000 genomes]
rs932171	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1006848	chr2:63061816-63631407	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2756598	chr2:63085848-63491438	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3340700	chr2:63127412-63534998	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1004678	chr2:63230722-63562484	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv535768	chr2:63413596-63631407	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1009191	chr2:63473443-63578508	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv834241	chr2:63490262-63668205	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63476600-63496000	Weak transcription	Primary B cells from cord blood	blood

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