Variant report

Variant	rs13433999
Chromosome Location	chr3:34773015-34773016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11708818	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11714434	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11716329	0.88[EUR][1000 genomes]
rs1520635	0.84[EUR][1000 genomes]
rs17032086	1.00[EUR][1000 genomes]
rs2884477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72859204	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7639968	1.00[EUR][1000 genomes]
rs9311061	0.80[EUR][1000 genomes]
rs9311063	0.83[AMR][1000 genomes]
rs9841899	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844596	0.88[EUR][1000 genomes]
rs9844622	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9853177	0.88[EUR][1000 genomes]
rs9864939	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9868482	0.88[EUR][1000 genomes]
rs9881526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997333	chr3:34734012-34795588	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1014239	chr3:34734012-34806671	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34772800-34773800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:34773000-34773400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:34773000-34773400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:34773000-34773800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:34773000-34773800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:34773000-34774000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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