Variant report
| Variant | rs9853177 |
|---|---|
| Chromosome Location | chr3:34714706-34714707 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs11708818 | 0.88[EUR][1000 genomes] |
| rs11714434 | 0.88[EUR][1000 genomes] |
| rs11716329 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13433999 | 0.88[EUR][1000 genomes] |
| rs1520635 | 0.96[EUR][1000 genomes] |
| rs17032086 | 0.88[EUR][1000 genomes] |
| rs28620172 | 0.91[EUR][1000 genomes] |
| rs2884477 | 0.88[EUR][1000 genomes] |
| rs72859204 | 1.00[EUR][1000 genomes] |
| rs7639968 | 0.88[EUR][1000 genomes] |
| rs9311061 | 0.92[EUR][1000 genomes] |
| rs9311063 | 0.91[EUR][1000 genomes] |
| rs9841899 | 0.88[EUR][1000 genomes] |
| rs9844596 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9844622 | 1.00[EUR][1000 genomes] |
| rs9864939 | 1.00[EUR][1000 genomes] |
| rs9868482 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9881526 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv519548 | chr3:34683998-34718800 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 2 | esv1816528 | chr3:34683998-34757534 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | nsv525435 | chr3:34698297-34718800 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:34711400-34718000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
