Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10778231	0.83[EUR][1000 genomes]
rs10778232	0.90[EUR][1000 genomes]
rs10778236	0.91[EUR][1000 genomes]
rs10778237	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10778238	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10860990	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11111540	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1879621	0.94[EUR][1000 genomes]
rs1996749	0.82[EUR][1000 genomes]
rs2374052	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2374060	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2374061	0.91[EUR][1000 genomes]
rs4764732	0.86[EUR][1000 genomes]
rs4764952	0.83[EUR][1000 genomes]
rs4764955	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6539066	0.84[EUR][1000 genomes]
rs6539069	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6539070	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7137989	0.80[EUR][1000 genomes]
rs7969597	0.90[EUR][1000 genomes]
rs7970479	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7970531	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7971321	0.84[EUR][1000 genomes]
rs8181626	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899477	chr12:103747515-103817326	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103707200-103786400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103763600-103786400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr12:103765800-103768400	Enhancers	Dnd41	blood
4	chr12:103767200-103768000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr12:103767200-103768600	Enhancers	Pancreas	Pancrea
6	chr12:103767800-103776600	Weak transcription	Thymus	Thymus

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