Variant report

Variant	rs2374061
Chromosome Location	chr12:103772777-103772778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10778228	0.86[CEU][hapmap]
rs10778231	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs10778232	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10778236	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10778237	0.86[CEU][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs10778238	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10860977	0.86[CEU][hapmap]
rs10860990	0.91[CEU][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs11111540	0.86[CEU][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs12301542	0.84[CEU][hapmap]
rs1343868	0.91[EUR][1000 genomes]
rs1879621	0.91[CEU][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1996749	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs2374052	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs2374060	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4764732	0.84[EUR][1000 genomes]
rs4764952	0.81[EUR][1000 genomes]
rs4764955	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs6539066	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs6539069	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6539070	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6539071	0.84[CEU][hapmap];0.89[GIH][hapmap];0.80[TSI][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7137989	0.86[CEU][hapmap]
rs7312908	0.84[CEU][hapmap]
rs7316140	0.82[CEU][hapmap]
rs7969597	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7970479	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7970531	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7971321	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs8181626	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899477	chr12:103747515-103817326	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1795884	chr12:103772579-103788340	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103707200-103786400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103763600-103786400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr12:103767800-103776600	Weak transcription	Thymus	Thymus
4	chr12:103771000-103773600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:103772600-103777400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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