Variant report

Variant	rs7137989
Chromosome Location	chr12:103689076-103689077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10778228	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10778231	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10778232	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs10778236	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs10778237	0.91[CEU][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs10778238	0.84[EUR][1000 genomes]
rs10860977	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10860989	0.82[CEU][hapmap]
rs10860990	0.86[CEU][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs11111537	0.82[CEU][hapmap]
rs11111540	0.82[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs12301542	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs12305336	0.82[CEU][hapmap]
rs1343868	0.80[EUR][1000 genomes]
rs1879621	0.95[CEU][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs1996749	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2374052	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs2374060	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs2374061	0.86[CEU][hapmap]
rs4764732	0.85[EUR][1000 genomes]
rs4764733	0.82[CEU][hapmap]
rs4764949	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4764952	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4764955	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs6539066	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6539069	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs6539070	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs7969597	0.89[EUR][1000 genomes]
rs7970479	0.86[EUR][1000 genomes]
rs7970531	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7971321	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8181626	0.85[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7137989	CHPT1	cis	cerebellum	SCAN
rs7137989	EID3	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103686000-103694800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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