Variant report

Variant	rs4764949
Chromosome Location	chr12:103658096-103658097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103657650..103660193-chr12:103660823..103663749,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179088	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10778228	0.91[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap]
rs10778231	0.91[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10778232	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs10778236	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs10778237	0.91[CEU][hapmap];0.89[TSI][hapmap]
rs10860977	0.91[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10860990	0.86[CEU][hapmap];0.89[TSI][hapmap]
rs11111540	0.91[CEU][hapmap];0.89[TSI][hapmap]
rs12301542	0.95[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap]
rs1879621	0.86[CEU][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs1996749	0.92[ASW][hapmap];0.82[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2374052	0.90[CEU][hapmap]
rs2374060	0.86[CEU][hapmap]
rs4764952	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4764955	0.86[CEU][hapmap]
rs6539066	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6539069	0.86[CEU][hapmap]
rs6539070	0.90[CEU][hapmap]
rs7137989	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7969597	0.81[EUR][1000 genomes]
rs7970531	0.86[CEU][hapmap]
rs7971321	0.86[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4764949	EID3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
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