Variant report

Variant	rs10860977
Chromosome Location	chr12:103682063-103682064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10778228	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs10778231	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10778232	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs10778236	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10778237	0.91[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs10778238	0.83[EUR][1000 genomes]
rs10860989	0.82[CEU][hapmap]
rs10860990	0.86[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs11111537	0.82[CEU][hapmap]
rs11111540	0.82[CEU][hapmap];0.91[TSI][hapmap]
rs12301542	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12305336	0.82[CEU][hapmap]
rs1879621	0.95[CEU][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs1996749	0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2374052	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs2374060	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs2374061	0.86[CEU][hapmap]
rs4764732	0.84[EUR][1000 genomes]
rs4764733	0.82[CEU][hapmap]
rs4764949	0.91[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4764952	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4764955	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs6539066	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6539069	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs6539070	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs7137989	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7969597	0.87[EUR][1000 genomes]
rs7970479	0.85[EUR][1000 genomes]
rs7970531	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs7971321	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8181626	0.84[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10860977	EID3	cis	cerebellum	SCAN
rs10860977	CHPT1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103674800-103682800	Weak transcription	Gastric	stomach

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