Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64924777..64926411-chr12:64929381..64931749,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10878187	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10878189	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10878190	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10878195	0.86[ASN][1000 genomes]
rs11175439	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11175445	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11175446	0.86[ASN][1000 genomes]
rs11829120	1.00[JPT][hapmap]
rs11837890	1.00[JPT][hapmap]
rs12316132	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12316944	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4075094	1.00[JPT][hapmap]
rs4964089	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4964110	1.00[CHB][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4964112	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs68094298	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7303577	1.00[JPT][hapmap]
rs73122393	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7966390	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7968623	1.00[CHB][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7970071	0.86[ASN][1000 genomes]
rs9795624	0.82[ASN][1000 genomes]
rs9795883	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64912400-64927600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64916600-64925400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr12:64916800-64925400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:64916800-64925400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:64916800-64925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:64917000-64925600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:64919800-64926600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:64922600-64925800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr12:64922800-64925400	Weak transcription	Psoas Muscle	Psoas
10	chr12:64922800-64926800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:64923400-64925400	Weak transcription	Fetal Muscle Leg	muscle
12	chr12:64925000-64925600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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