Variant report

Variant	rs11829120
Chromosome Location	chr12:64870510-64870511
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:64869134..64870653-chr12:64873170..64875671,2	MCF-7	breast:
2	chr12:64870472..64872747-chr12:64874671..64877067,3	K562	blood:
3	chr12:64845764..64849581-chr12:64869268..64872699,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183735	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11837890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4075094	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41292023	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55654954	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55690537	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55999447	0.84[EUR][1000 genomes]
rs56198126	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56326550	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58143737	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60358746	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60520114	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61396007	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61931543	0.84[EUR][1000 genomes]
rs61931544	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61931545	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61931549	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61931550	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61931552	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61931555	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61931557	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61931558	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61933191	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933192	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933195	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933196	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933198	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933199	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933201	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933202	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933204	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933205	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933207	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933209	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933211	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933212	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7303577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73120375	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73120383	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73122367	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7488918	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64847000-64900800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64853200-64871600	Strong transcription	Placenta	Placenta
3	chr12:64853400-64896800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:64854000-64875800	Weak transcription	Stomach Mucosa	stomach
5	chr12:64854000-64886600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr12:64854000-64893000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr12:64854200-64871400	Strong transcription	Fetal Intestine Large	intestine
8	chr12:64854200-64872800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr12:64854400-64897200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr12:64854600-64894000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr12:64854800-64893600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr12:64855200-64871200	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr12:64855400-64871000	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr12:64855400-64871400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr12:64855600-64887600	Strong transcription	Dnd41	blood
16	chr12:64856600-64871200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr12:64858000-64871400	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr12:64858200-64871800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:64858200-64874600	Strong transcription	Duodenum Mucosa	Duodenum
20	chr12:64858400-64871000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr12:64858400-64877800	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr12:64862400-64872000	Strong transcription	Primary hematopoietic stem cells	blood
23	chr12:64862400-64885800	Strong transcription	HSMM	muscle
24	chr12:64862800-64896800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:64863000-64882400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr12:64863400-64879800	Weak transcription	Brain Angular Gyrus	brain
27	chr12:64864000-64887000	Weak transcription	Colonic Mucosa	Colon
28	chr12:64864200-64872200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr12:64865200-64870600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr12:64865400-64870600	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr12:64865400-64871600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr12:64865600-64871200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr12:64866000-64897000	Weak transcription	Esophagus	oesophagus
34	chr12:64867800-64872200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr12:64868600-64870600	Strong transcription	Fetal Muscle Leg	muscle
36	chr12:64868600-64871000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr12:64868600-64871200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
38	chr12:64868600-64871400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
39	chr12:64868600-64871400	ZNF genes & repeats	GM12878-XiMat	blood
40	chr12:64869000-64870800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
41	chr12:64869000-64871000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr12:64869000-64871200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr12:64869000-64871200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr12:64869000-64871400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr12:64869000-64871400	ZNF genes & repeats	A549	lung
46	chr12:64869200-64870600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
47	chr12:64869200-64870800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
48	chr12:64869200-64871000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
49	chr12:64869200-64871200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr12:64869200-64871200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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