Variant report

Variant	rs55999447
Chromosome Location	chr12:64762785-64762786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64761265..64763916-chr12:64786555..64788789,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11829120	0.84[EUR][1000 genomes]
rs11837890	0.84[EUR][1000 genomes]
rs4075094	0.82[EUR][1000 genomes]
rs41292023	0.84[EUR][1000 genomes]
rs55654954	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56198126	0.83[AFR][1000 genomes]
rs56326550	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58143737	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60358746	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60520114	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61396007	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61931525	0.81[EUR][1000 genomes]
rs61931543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61931545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61931549	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61931550	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61931552	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61931555	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61931557	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61933191	0.89[AMR][1000 genomes]
rs61933192	0.84[EUR][1000 genomes]
rs61933195	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61933196	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61933198	0.82[EUR][1000 genomes]
rs61933199	0.82[EUR][1000 genomes]
rs61933200	0.84[EUR][1000 genomes]
rs61933201	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61933202	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61933204	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61933205	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61933207	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61933209	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61933211	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61933212	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7303577	0.84[EUR][1000 genomes]
rs73120375	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73120383	0.82[EUR][1000 genomes]
rs73122367	0.85[AMR][1000 genomes]
rs7488918	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64758600-64779800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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