Variant report

Variant	rs7488918
Chromosome Location	chr12:64805896-64805897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:64803609..64806157-chr12:64842911..64845775,2	K562	blood:
2	chr12:64805857..64808652-chr12:65088960..65090707,2	MCF-7	breast:
3	chr12:64804147..64806625-chr12:64808285..64811200,3	MCF-7	breast:
4	chr12:64804231..64806720-chr12:64811625..64814288,2	MCF-7	breast:
5	chr12:64802792..64804395-chr12:64804801..64806330,2	K562	blood:

Variant related genes	Relation type
ENSG00000268028	Chromatin interaction
ENSG00000183735	Chromatin interaction
ENSG00000184575	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11829120	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11837890	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4075094	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41292023	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55654954	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55690537	0.86[EUR][1000 genomes]
rs55999447	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56198126	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56326550	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58143737	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60358746	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60520114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61396007	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931543	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61931544	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931545	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931549	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931550	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931552	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931555	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931557	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931558	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933191	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933192	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933195	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933196	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933198	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933199	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933200	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933201	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933202	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933204	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933205	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61933207	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933209	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933211	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933212	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7303577	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73120375	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73120383	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73122367	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64799200-64821200	Weak transcription	Stomach Mucosa	stomach
2	chr12:64799400-64806400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:64799400-64844600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:64799600-64806600	Weak transcription	Aorta	Aorta
5	chr12:64799600-64810400	Weak transcription	Colonic Mucosa	Colon
6	chr12:64799800-64806000	Weak transcription	Colon Smooth Muscle	Colon
7	chr12:64799800-64806000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr12:64799800-64806200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr12:64799800-64806200	Weak transcription	Fetal Brain Female	brain
10	chr12:64799800-64839600	Weak transcription	Fetal Heart	heart
11	chr12:64800000-64806000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:64800000-64806200	Weak transcription	Fetal Lung	lung
13	chr12:64800000-64806200	Weak transcription	Psoas Muscle	Psoas
14	chr12:64800000-64806400	Weak transcription	Spleen	Spleen
15	chr12:64800200-64806400	Weak transcription	Right Ventricle	heart
16	chr12:64800200-64819800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr12:64800600-64806200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr12:64800600-64844000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:64800800-64806600	Weak transcription	Brain Angular Gyrus	brain
20	chr12:64800800-64842400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr12:64801400-64809800	Weak transcription	Fetal Brain Male	brain
22	chr12:64801600-64818800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr12:64801600-64843600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr12:64801800-64806000	Weak transcription	Pancreas	Pancrea
25	chr12:64801800-64806200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr12:64802400-64843000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr12:64802400-64844000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr12:64802600-64817000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:64802600-64844000	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr12:64802800-64806000	Weak transcription	Brain Germinal Matrix	brain
31	chr12:64802800-64806400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr12:64802800-64842800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr12:64802800-64843200	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr12:64802800-64843200	Strong transcription	Dnd41	blood
35	chr12:64802800-64844000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr12:64803000-64806000	Weak transcription	Brain Substantia Nigra	brain
37	chr12:64803000-64812400	Strong transcription	K562	blood
38	chr12:64803000-64844200	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr12:64803200-64806000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr12:64803200-64808400	Strong transcription	NHEK	skin
41	chr12:64803400-64806600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr12:64803400-64819800	Strong transcription	HMEC	breast
43	chr12:64803600-64808400	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr12:64803600-64821200	Strong transcription	HepG2	liver
45	chr12:64803600-64823400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr12:64803600-64836200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr12:64803600-64837400	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr12:64803600-64837600	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr12:64803600-64842000	Strong transcription	NHDF-Ad	bronchial
50	chr12:64803600-64842200	Strong transcription	H1 Cell Line	embryonic stem cell

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