Variant report

Variant	rs11837890
Chromosome Location	chr12:64863983-64863984
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:64844510..64848155-chr12:64860979..64865649,6	MCF-7	breast:
2	chr12:64853450..64857742-chr12:64858532..64865395,7	K562	blood:
3	chr12:64861765..64864078-chr12:64880936..64882911,2	K562	blood:
4	chr12:64853600..64855746-chr12:64863956..64865498,3	MCF-7	breast:
5	chr12:64861697..64865253-chr12:64865580..64868306,3	MCF-7	breast:
6	chr12:64843560..64849494-chr12:64862941..64869931,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183735	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11829120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4075094	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292023	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55654954	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55690537	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55999447	0.84[EUR][1000 genomes]
rs56198126	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56326550	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58143737	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60358746	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60520114	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61396007	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931543	0.84[EUR][1000 genomes]
rs61931544	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931545	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931549	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931550	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931552	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931555	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931557	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931558	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933191	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933192	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933195	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933196	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933198	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933199	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933200	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933201	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933202	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933204	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933205	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933207	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933209	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933211	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933212	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7303577	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73120375	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73120383	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73122367	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7488918	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11837890	RBMS1	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64847000-64900800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64847200-64864200	Weak transcription	Fetal Heart	heart
3	chr12:64849000-64869000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:64849200-64869200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:64853000-64868600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:64853200-64871600	Strong transcription	Placenta	Placenta
7	chr12:64853400-64864400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:64853400-64866200	Weak transcription	Small Intestine	intestine
9	chr12:64853400-64868600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:64853400-64868600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr12:64853400-64869000	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr12:64853400-64870200	Weak transcription	Thymus	Thymus
13	chr12:64853400-64896800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr12:64853600-64870200	Weak transcription	Fetal Thymus	thymus
15	chr12:64853800-64865400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr12:64853800-64868400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr12:64854000-64869000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr12:64854000-64875800	Weak transcription	Stomach Mucosa	stomach
19	chr12:64854000-64886600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr12:64854000-64893000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr12:64854200-64871400	Strong transcription	Fetal Intestine Large	intestine
22	chr12:64854200-64872800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr12:64854400-64869000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr12:64854400-64897200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr12:64854600-64894000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr12:64854800-64893600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr12:64855200-64868600	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr12:64855200-64869200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr12:64855200-64869600	Strong transcription	HUVEC	blood vessel
30	chr12:64855200-64871200	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr12:64855400-64866000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr12:64855400-64869000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr12:64855400-64871000	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr12:64855400-64871400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr12:64855600-64887600	Strong transcription	Dnd41	blood
36	chr12:64856000-64868600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr12:64856000-64869000	Strong transcription	A549	lung
38	chr12:64856600-64871200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr12:64857000-64869200	Strong transcription	Liver	Liver
40	chr12:64857400-64868600	Strong transcription	GM12878-XiMat	blood
41	chr12:64857600-64870000	Strong transcription	Osteobl	bone
42	chr12:64857800-64864000	Strong transcription	HepG2	liver
43	chr12:64857800-64866000	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr12:64857800-64866400	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr12:64857800-64869000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr12:64857800-64869200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr12:64857800-64869800	Strong transcription	NH-A	brain
48	chr12:64858000-64866200	Strong transcription	NHDF-Ad	bronchial
49	chr12:64858000-64869200	Strong transcription	Primary B cells from peripheral blood	blood
50	chr12:64858000-64870200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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