Variant report

Variant	rs61933211
Chromosome Location	chr12:64897480-64897481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11829120	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11837890	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075094	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292023	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55654954	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55690537	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55999447	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56198126	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56326550	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58143737	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60358746	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60520114	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61396007	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931543	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61931544	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931545	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61931549	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931550	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931552	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931555	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931557	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931558	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933191	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933192	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933195	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933196	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933198	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933199	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933200	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933201	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933202	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933204	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933205	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933207	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933209	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933212	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7303577	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73120375	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73120383	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73122367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7488918	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64847000-64900800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64871000-64908200	Weak transcription	Psoas Muscle	Psoas
3	chr12:64884600-64897800	Weak transcription	Aorta	Aorta
4	chr12:64885400-64904400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:64887600-64898200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr12:64887800-64902800	Weak transcription	Colonic Mucosa	Colon
7	chr12:64888400-64904600	Weak transcription	Left Ventricle	heart
8	chr12:64889400-64903800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr12:64890600-64904600	Weak transcription	HSMMtube	muscle
10	chr12:64891200-64902000	Weak transcription	Brain Substantia Nigra	brain
11	chr12:64892000-64903000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr12:64892000-64903800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr12:64892400-64899000	Weak transcription	Lung	lung
14	chr12:64892400-64899600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr12:64892800-64899000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr12:64893000-64901400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr12:64893800-64904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:64894000-64899400	Weak transcription	Fetal Brain Male	brain
19	chr12:64894200-64897800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr12:64894200-64898200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr12:64894400-64897600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr12:64894400-64902400	Weak transcription	Brain Hippocampus Middle	brain
23	chr12:64894400-64903200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr12:64894400-64903400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr12:64894600-64900200	Weak transcription	Fetal Muscle Leg	muscle
26	chr12:64895000-64899000	Weak transcription	Fetal Intestine Small	intestine
27	chr12:64895000-64900800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr12:64895000-64902600	Weak transcription	Fetal Stomach	stomach
29	chr12:64895600-64897600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr12:64895600-64897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr12:64895600-64897600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr12:64895600-64897600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr12:64895600-64898000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr12:64895600-64903600	Weak transcription	GM12878-XiMat	blood
35	chr12:64895800-64897600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr12:64895800-64897600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr12:64895800-64897800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr12:64895800-64898000	Weak transcription	Adipose Nuclei	Adipose
39	chr12:64895800-64898400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr12:64895800-64899000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr12:64895800-64903400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr12:64895800-64912200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr12:64896000-64897600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr12:64896000-64897800	Weak transcription	Osteobl	bone
45	chr12:64896000-64898200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr12:64896000-64898400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr12:64896000-64898600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr12:64896000-64898600	Weak transcription	NHDF-Ad	bronchial
49	chr12:64896000-64904600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr12:64896200-64897800	Weak transcription	Liver	Liver

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