Variant report

Variant	rs61933201
Chromosome Location	chr12:64875264-64875265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:64869134..64870653-chr12:64873170..64875671,2	MCF-7	breast:
2	chr12:64865468..64867135-chr12:64874973..64877407,2	K562	blood:
3	chr12:64872684..64875625-chr12:64876455..64879881,3	MCF-7	breast:
4	chr12:64870472..64872747-chr12:64874671..64877067,3	K562	blood:

Variant related genes	Relation type
ENSG00000183735	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11829120	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11837890	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075094	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292023	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55654954	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55690537	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55999447	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56198126	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56326550	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58143737	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60358746	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60520114	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61396007	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931543	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61931544	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931545	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931549	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931550	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931552	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931555	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931557	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931558	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933191	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933192	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933195	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933196	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933198	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933199	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933200	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933202	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933204	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933207	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933209	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933211	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933212	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7303577	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73120375	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73120383	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73122367	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7488918	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64847000-64900800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64853400-64896800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:64854000-64875800	Weak transcription	Stomach Mucosa	stomach
4	chr12:64854000-64886600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr12:64854000-64893000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr12:64854400-64897200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr12:64854600-64894000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr12:64854800-64893600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr12:64855600-64887600	Strong transcription	Dnd41	blood
10	chr12:64858400-64877800	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr12:64862400-64885800	Strong transcription	HSMM	muscle
12	chr12:64862800-64896800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:64863000-64882400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr12:64863400-64879800	Weak transcription	Brain Angular Gyrus	brain
15	chr12:64864000-64887000	Weak transcription	Colonic Mucosa	Colon
16	chr12:64866000-64897000	Weak transcription	Esophagus	oesophagus
17	chr12:64869200-64883400	Weak transcription	Gastric	stomach
18	chr12:64869200-64883800	Weak transcription	Aorta	Aorta
19	chr12:64869400-64877400	Weak transcription	Fetal Stomach	stomach
20	chr12:64869400-64878000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr12:64869400-64879600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr12:64869400-64880200	Weak transcription	Pancreas	Pancrea
23	chr12:64869400-64880200	Weak transcription	Spleen	Spleen
24	chr12:64869600-64875800	Weak transcription	Ovary	ovary
25	chr12:64869600-64876000	Weak transcription	Brain Anterior Caudate	brain
26	chr12:64869600-64878200	Weak transcription	HSMMtube	muscle
27	chr12:64869600-64878800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr12:64869600-64879600	Weak transcription	Brain Substantia Nigra	brain
29	chr12:64869600-64880000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr12:64869600-64880200	Weak transcription	Lung	lung
31	chr12:64869600-64880200	Weak transcription	Right Ventricle	heart
32	chr12:64869600-64881000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr12:64869600-64883800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr12:64869600-64884000	Weak transcription	Brain Germinal Matrix	brain
35	chr12:64869600-64892000	Weak transcription	Small Intestine	intestine
36	chr12:64869600-64893000	Weak transcription	Fetal Brain Male	brain
37	chr12:64869800-64876000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr12:64869800-64876400	Weak transcription	Left Ventricle	heart
39	chr12:64869800-64880000	Weak transcription	NHEK	skin
40	chr12:64869800-64881400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr12:64869800-64883800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr12:64869800-64888600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr12:64869800-64895400	Weak transcription	Fetal Kidney	kidney
44	chr12:64870000-64882400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr12:64870000-64883800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr12:64870000-64893600	Weak transcription	Fetal Heart	heart
47	chr12:64870200-64877600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr12:64870400-64876000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr12:64870400-64876000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr12:64870400-64882400	Weak transcription	Fetal Intestine Small	intestine

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