Variant report

Variant	rs61933196
Chromosome Location	chr12:64853405-64853406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64852350..64855136-chr12:64865917..64868601,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11829120	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11837890	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075094	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292023	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55654954	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55690537	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55999447	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56198126	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56326550	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58143737	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60358746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60520114	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61396007	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931543	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61931544	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931545	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931549	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931550	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931552	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931555	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931557	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931558	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933191	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933192	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933195	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933198	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933199	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933200	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933201	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933202	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933204	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933205	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933207	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933211	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933212	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7303577	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73120375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73120383	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73122367	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7488918	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64846600-64856800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:64846600-64857000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:64846800-64855400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:64846800-64862600	Weak transcription	Pancreas	Pancrea
5	chr12:64847000-64854200	Weak transcription	Fetal Stomach	stomach
6	chr12:64847000-64855200	Weak transcription	Lung	lung
7	chr12:64847000-64860400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:64847000-64862600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:64847000-64862600	Weak transcription	Right Ventricle	heart
10	chr12:64847000-64900800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:64847200-64862600	Weak transcription	Fetal Brain Male	brain
12	chr12:64847200-64864200	Weak transcription	Fetal Heart	heart
13	chr12:64847600-64855000	Weak transcription	NH-A	brain
14	chr12:64847600-64856800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:64847600-64861800	Weak transcription	Fetal Brain Female	brain
16	chr12:64847800-64861600	Weak transcription	Fetal Kidney	kidney
17	chr12:64847800-64862800	Weak transcription	Brain Germinal Matrix	brain
18	chr12:64848400-64854200	Weak transcription	Fetal Intestine Small	intestine
19	chr12:64849000-64869000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:64849200-64869200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr12:64850800-64855800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr12:64852400-64853600	Genic enhancers	Brain Anterior Caudate	brain
23	chr12:64852400-64853600	Transcr. at gene 5' and 3'	A549	lung
24	chr12:64852400-64853600	Enhancers	HSMMtube	muscle
25	chr12:64852600-64853600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:64852600-64853800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr12:64852800-64853600	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr12:64852800-64853600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr12:64852800-64853600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr12:64852800-64853600	Enhancers	Fetal Thymus	thymus
31	chr12:64852800-64853800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr12:64852800-64853800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr12:64852800-64853800	Active TSS	Stomach Smooth Muscle	stomach
34	chr12:64852800-64853800	Transcr. at gene 5' and 3'	Osteobl	bone
35	chr12:64853000-64853600	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr12:64853000-64853600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
37	chr12:64853000-64853600	Transcr. at gene 5' and 3'	Left Ventricle	heart
38	chr12:64853000-64853600	Transcr. at gene 5' and 3'	HUVEC	blood vessel
39	chr12:64853000-64853800	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr12:64853000-64853800	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr12:64853000-64853800	Active TSS	Right Atrium	heart
42	chr12:64853000-64853800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr12:64853000-64854000	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr12:64853000-64854000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr12:64853000-64862600	Weak transcription	Spleen	Spleen
46	chr12:64853000-64868600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr12:64853200-64853600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr12:64853200-64853600	Active TSS	Psoas Muscle	Psoas
49	chr12:64853200-64853600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr12:64853200-64853800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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