Variant report

Variant	rs61931544
Chromosome Location	chr12:64779875-64779876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11829120	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11837890	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4075094	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41292023	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55654954	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55999447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56198126	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs56326550	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58143737	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60358746	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60520114	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61396007	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61931545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931549	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931550	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931552	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931555	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931557	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931558	1.00[ASN][1000 genomes]
rs61933191	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933192	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933195	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933196	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933198	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933199	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933200	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933201	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933202	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933204	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933205	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61933207	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933209	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933211	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933212	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7303577	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73120375	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73120383	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73122367	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7488918	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64763200-64781200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:64777400-64781400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr12:64777400-64781600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:64777600-64780000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr12:64777600-64780000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr12:64777600-64780600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr12:64777600-64781200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr12:64777800-64780000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr12:64777800-64780200	Enhancers	Hela-S3	cervix
10	chr12:64778000-64780200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr12:64778000-64780200	Enhancers	Dnd41	blood
12	chr12:64778200-64780200	Enhancers	NHEK	skin
13	chr12:64778200-64780600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr12:64778400-64780000	Enhancers	Fetal Thymus	thymus
15	chr12:64778600-64780000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr12:64778600-64783800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr12:64778800-64782800	Weak transcription	Esophagus	oesophagus
18	chr12:64779000-64780000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:64779000-64780000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr12:64779000-64780000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr12:64779000-64780000	Enhancers	HMEC	breast
22	chr12:64779000-64780000	Enhancers	NHDF-Ad	bronchial
23	chr12:64779000-64780000	Enhancers	Osteobl	bone
24	chr12:64779200-64780000	Enhancers	Primary T cells from cord blood	blood
25	chr12:64779200-64780000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr12:64779600-64783800	Weak transcription	NH-A	brain
27	chr12:64779800-64780000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr12:64779800-64780000	Enhancers	HSMM	muscle
29	chr12:64779800-64782800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:64779800-64783800	Weak transcription	NHLF	lung
31	chr12:64779800-64784000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr12:64779800-64784000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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