Variant report

Variant	rs61396007
Chromosome Location	chr12:64851431-64851432
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:64849898..64852415-chr12:65003845..65005618,2	K562	blood:
2	chr12:64798390..64800656-chr12:64849196..64852188,2	MCF-7	breast:
3	chr12:64850168..64852626-chr12:64865880..64867926,2	K562	blood:
4	chr12:64850817..64852415-chr12:65004118..65006868,2	K562	blood:

Variant related genes	Relation type
ENSG00000153179	Chromatin interaction
ENSG00000184575	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11829120	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11837890	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075094	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292023	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55654954	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55690537	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55999447	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56198126	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56326550	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58143737	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60358746	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60520114	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931543	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61931544	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931545	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931549	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931550	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931552	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931555	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931557	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931558	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61933191	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933192	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933195	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933196	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933198	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933199	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933200	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933201	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933202	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933205	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61933207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933209	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933211	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933212	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7303577	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73120375	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73120383	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73122367	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7488918	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64846600-64852400	Weak transcription	Spleen	Spleen
2	chr12:64846600-64856800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:64846600-64857000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:64846800-64852800	Weak transcription	Esophagus	oesophagus
5	chr12:64846800-64852800	Weak transcription	Gastric	stomach
6	chr12:64846800-64855400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:64846800-64862600	Weak transcription	Pancreas	Pancrea
8	chr12:64847000-64852600	Weak transcription	Stomach Mucosa	stomach
9	chr12:64847000-64852800	Weak transcription	Ovary	ovary
10	chr12:64847000-64852800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr12:64847000-64852800	Weak transcription	Psoas Muscle	Psoas
12	chr12:64847000-64853000	Weak transcription	Colonic Mucosa	Colon
13	chr12:64847000-64854200	Weak transcription	Fetal Stomach	stomach
14	chr12:64847000-64855200	Weak transcription	Lung	lung
15	chr12:64847000-64860400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr12:64847000-64862600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr12:64847000-64862600	Weak transcription	Right Ventricle	heart
18	chr12:64847000-64900800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr12:64847200-64852600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr12:64847200-64862600	Weak transcription	Fetal Brain Male	brain
21	chr12:64847200-64864200	Weak transcription	Fetal Heart	heart
22	chr12:64847600-64852400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr12:64847600-64852400	Weak transcription	Liver	Liver
24	chr12:64847600-64852400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr12:64847600-64852400	Weak transcription	Brain Substantia Nigra	brain
26	chr12:64847600-64852600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr12:64847600-64852600	Weak transcription	Brain Hippocampus Middle	brain
28	chr12:64847600-64852800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr12:64847600-64852800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr12:64847600-64852800	Weak transcription	Right Atrium	heart
31	chr12:64847600-64853200	Weak transcription	Aorta	Aorta
32	chr12:64847600-64855000	Weak transcription	NH-A	brain
33	chr12:64847600-64856800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr12:64847600-64861800	Weak transcription	Fetal Brain Female	brain
35	chr12:64847800-64852400	Weak transcription	Brain Anterior Caudate	brain
36	chr12:64847800-64852800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr12:64847800-64852800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr12:64847800-64852800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr12:64847800-64852800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr12:64847800-64861600	Weak transcription	Fetal Kidney	kidney
41	chr12:64847800-64862800	Weak transcription	Brain Germinal Matrix	brain
42	chr12:64848400-64854200	Weak transcription	Fetal Intestine Small	intestine
43	chr12:64849000-64869000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr12:64849200-64852600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr12:64849200-64869200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr12:64849400-64851800	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr12:64849400-64852200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr12:64849400-64852400	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr12:64849400-64852600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr12:64849400-64852800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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