Variant report

Variant	rs13439358
Chromosome Location	chr8:124777140-124777141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11987639	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11989364	0.90[EUR][1000 genomes]
rs11989474	0.90[EUR][1000 genomes]
rs1431669	0.90[EUR][1000 genomes]
rs16898846	0.97[EUR][1000 genomes]
rs16898882	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17260118	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17351356	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17351672	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17351749	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17351770	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17352222	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2116361	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs28490169	0.93[EUR][1000 genomes]
rs6985701	0.93[EUR][1000 genomes]
rs6990465	1.00[EUR][1000 genomes]
rs6994690	0.97[EUR][1000 genomes]
rs7007309	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7010092	1.00[EUR][1000 genomes]
rs7013861	0.97[EUR][1000 genomes]
rs7016623	0.90[EUR][1000 genomes]
rs73333723	0.90[EUR][1000 genomes]
rs73703653	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73703655	1.00[EUR][1000 genomes]
rs73703656	0.97[EUR][1000 genomes]
rs7821509	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6373	chr8:124741567-124786609	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124767800-124778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:124770600-124780000	Weak transcription	Pancreas	Pancrea
3	chr8:124773600-124778200	Weak transcription	K562	blood
4	chr8:124775800-124778400	Weak transcription	Brain Anterior Caudate	brain
5	chr8:124775800-124778400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:124775800-124779600	Weak transcription	Fetal Intestine Large	intestine
7	chr8:124776000-124778200	Weak transcription	HepG2	liver
8	chr8:124776000-124778400	Weak transcription	Liver	Liver
9	chr8:124776000-124779800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:124776000-124779800	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:124776000-124780000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:124776200-124778000	Weak transcription	Fetal Heart	heart
13	chr8:124776200-124778000	Weak transcription	Fetal Intestine Small	intestine
14	chr8:124776200-124778600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:124776200-124779400	Weak transcription	HMEC	breast
16	chr8:124776200-124779600	Weak transcription	Colon Smooth Muscle	Colon
17	chr8:124776400-124778600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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