Variant report

Variant	rs1431669
Chromosome Location	chr8:124850835-124850836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11987639	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11989364	0.93[EUR][1000 genomes]
rs11989474	1.00[EUR][1000 genomes]
rs13439358	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs16898846	0.87[EUR][1000 genomes]
rs16898882	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17260118	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17351356	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17351672	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17351749	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17351770	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17352222	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2116361	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28490169	0.96[EUR][1000 genomes]
rs6985701	0.96[EUR][1000 genomes]
rs6990465	0.90[EUR][1000 genomes]
rs6994690	0.93[EUR][1000 genomes]
rs7007309	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7010092	0.90[EUR][1000 genomes]
rs7013861	0.87[EUR][1000 genomes]
rs7016623	1.00[EUR][1000 genomes]
rs73333723	0.86[EUR][1000 genomes]
rs73703653	0.93[EUR][1000 genomes]
rs73703655	0.90[EUR][1000 genomes]
rs73703656	0.93[EUR][1000 genomes]
rs7821509	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124849400-124853400	Enhancers	Hela-S3	cervix
2	chr8:124849600-124852000	Enhancers	NH-A	brain
3	chr8:124850000-124851000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:124850000-124851000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr8:124850000-124853400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:124850200-124851000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:124850200-124851000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:124850200-124851000	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr8:124850200-124851000	Flanking Active TSS	NHDF-Ad	bronchial
10	chr8:124850200-124852200	Weak transcription	HUVEC	blood vessel
11	chr8:124850400-124851000	Active TSS	Adipose Nuclei	Adipose
12	chr8:124850400-124851000	Active TSS	Colon Smooth Muscle	Colon
13	chr8:124850400-124851000	Active TSS	Ovary	ovary
14	chr8:124850400-124851000	Active TSS	Stomach Smooth Muscle	stomach
15	chr8:124850600-124851000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:124850600-124851000	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr8:124850600-124851400	Enhancers	NHEK	skin
18	chr8:124850800-124851000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:124850800-124851000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr8:124850800-124851000	Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr8:124850800-124851000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr8:124850800-124851000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr8:124850800-124851000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:124850800-124851000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:124850800-124851000	Enhancers	Stomach Mucosa	stomach
26	chr8:124850800-124851000	Active TSS	Monocytes-CD14+_RO01746	blood
27	chr8:124850800-124851000	Enhancers	NHLF	lung
28	chr8:124850800-124851200	Enhancers	Duodenum Mucosa	Duodenum
29	chr8:124850800-124851400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr8:124850800-124851600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr8:124850800-124851600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:124850800-124851600	Weak transcription	Small Intestine	intestine
33	chr8:124850800-124852800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:124850800-124852800	Enhancers	HSMMtube	muscle
35	chr8:124850800-124853000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:124850800-124853000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:124850800-124853400	Enhancers	Osteobl	bone
38	chr8:124850800-124853600	Enhancers	HMEC	breast
39	chr8:124850800-124853600	Enhancers	HSMM	muscle
40	chr8:124850800-124855200	Weak transcription	Aorta	Aorta

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