Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:124838033..124841894-chr8:124842297..124845271,3	K562	blood:
2	chr8:124829200..124831178-chr8:124838352..124840384,2	K562	blood:
3	chr8:124839004..124841894-chr8:124842297..124845271,2	K562	blood:
4	chr8:124835624..124840070-chr8:124931025..124937507,8	MCF-7	breast:
5	chr2:152986952..152989072-chr8:124837259..124840005,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234272	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11987639	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11989364	0.93[EUR][1000 genomes]
rs11989474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439358	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1431669	1.00[EUR][1000 genomes]
rs16898846	0.87[EUR][1000 genomes]
rs16898882	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17260118	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17351356	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17351672	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17351749	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs17351770	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes]
rs2116361	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28490169	0.96[EUR][1000 genomes]
rs6985701	0.96[EUR][1000 genomes]
rs6990465	0.90[EUR][1000 genomes]
rs6994690	0.93[EUR][1000 genomes]
rs7007309	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7010092	0.90[EUR][1000 genomes]
rs7013861	0.87[EUR][1000 genomes]
rs7016623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73333723	0.86[EUR][1000 genomes]
rs73703653	0.93[EUR][1000 genomes]
rs73703655	0.90[EUR][1000 genomes]
rs73703656	0.93[EUR][1000 genomes]
rs7821509	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124829400-124845000	Weak transcription	NHLF	lung
2	chr8:124829800-124844000	Weak transcription	Fetal Lung	lung
3	chr8:124836400-124850000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:124837000-124843800	Weak transcription	Ovary	ovary
5	chr8:124837400-124840200	Enhancers	Brain Hippocampus Middle	brain
6	chr8:124837600-124839600	Enhancers	Brain Anterior Caudate	brain
7	chr8:124837600-124839600	Enhancers	Brain Substantia Nigra	brain
8	chr8:124837800-124839800	Enhancers	Brain Angular Gyrus	brain
9	chr8:124838600-124844400	Weak transcription	Fetal Stomach	stomach
10	chr8:124839000-124840200	Weak transcription	Placenta	Placenta
11	chr8:124839200-124840000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: