Variant report

Variant	rs135028
Chromosome Location	chr22:33228070-33228071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32860159-32865649..22:33224847-33230875	Hela-S3	cervix:
2	22:32544939-32549151..22:33224847-33230875	Hela-S3	cervix:
3	22:32920308-32927723..22:33224847-33230875	H1-hESC	embryonic stem cell:	embryo
4	22:33224847-33230875..22:33339333-33353583	K562	blood:
5	22:32750950-32761732..22:33224847-33230875	Hela-S3	cervix:
6	chr22:33225157..33228070-chr22:33230052..33232364,2	K562	blood:
7	chr22:33223873..33228070-chr22:33230052..33232364,3	K562	blood:
8	22:32764253-32784733..22:33224847-33230875	K562	blood:

Variant related genes	Relation type
ENSG00000128276	Chromatin interaction
ENSG00000243519	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000271093	Chromatin interaction
ENSG00000230736	Chromatin interaction
ENSG00000205856	Chromatin interaction
ENSG00000205853	Chromatin interaction
ENSG00000241954	Chromatin interaction
ENSG00000232218	Chromatin interaction
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs107614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs130290	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs130293	1.00[CHB][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs130301	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs130302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs130305	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs130527	1.00[ASW][hapmap]
rs130529	1.00[ASW][hapmap]
rs135026	1.00[CHB][hapmap]
rs135153	1.00[ASW][hapmap];0.88[TSI][hapmap]
rs171383	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs181425	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs242084	0.80[AMR][1000 genomes]
rs242087	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs25027	0.80[AMR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33211000-33240400	Genic enhancers	Left Ventricle	heart
2	chr22:33217800-33229000	Weak transcription	NHLF	lung
3	chr22:33217800-33248600	Weak transcription	Gastric	stomach
4	chr22:33220600-33229800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr22:33221800-33228400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr22:33222200-33236000	Enhancers	Right Atrium	heart
7	chr22:33222400-33229000	Genic enhancers	Fetal Stomach	stomach
8	chr22:33222600-33230800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr22:33222600-33240400	Genic enhancers	Adipose Nuclei	Adipose
10	chr22:33222600-33258800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr22:33222800-33228200	Enhancers	Brain Hippocampus Middle	brain
12	chr22:33222800-33238200	Genic enhancers	Fetal Muscle Leg	muscle
13	chr22:33223000-33228200	Enhancers	Brain Substantia Nigra	brain
14	chr22:33223200-33232600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr22:33223400-33235400	Weak transcription	Fetal Intestine Large	intestine
16	chr22:33223600-33228200	Enhancers	Brain Cingulate Gyrus	brain
17	chr22:33223800-33228200	Enhancers	Brain Anterior Caudate	brain
18	chr22:33223800-33228200	Genic enhancers	Fetal Muscle Trunk	muscle
19	chr22:33223800-33229000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr22:33224200-33233400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr22:33224600-33229000	Genic enhancers	Lung	lung
22	chr22:33224800-33234200	Weak transcription	Fetal Kidney	kidney
23	chr22:33225600-33228200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr22:33225600-33228400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr22:33225800-33228200	Enhancers	Right Ventricle	heart
26	chr22:33226200-33236200	Weak transcription	Fetal Intestine Small	intestine
27	chr22:33226400-33228200	Enhancers	Placenta	Placenta
28	chr22:33226400-33233800	Weak transcription	NHEK	skin
29	chr22:33226600-33232600	Weak transcription	Esophagus	oesophagus
30	chr22:33226600-33233600	Strong transcription	Osteobl	bone
31	chr22:33226600-33235600	Weak transcription	NH-A	brain
32	chr22:33226600-33238000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr22:33226600-33238400	Enhancers	Fetal Heart	heart
34	chr22:33226800-33228400	Enhancers	Fetal Thymus	thymus
35	chr22:33226800-33230400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr22:33226800-33230400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr22:33226800-33230800	Weak transcription	HSMM	muscle
38	chr22:33226800-33232200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr22:33227000-33228600	Enhancers	Colon Smooth Muscle	Colon
40	chr22:33227000-33228600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr22:33227000-33228800	Weak transcription	NHDF-Ad	bronchial
42	chr22:33227000-33229200	Weak transcription	HSMMtube	muscle
43	chr22:33227000-33232600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr22:33227000-33235000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr22:33227000-33272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr22:33227200-33228400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr22:33227200-33230400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr22:33227200-33234200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr22:33227400-33228400	Enhancers	Primary hematopoietic stem cells	blood
50	chr22:33227400-33228400	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links