Variant report

Variant	rs171383
Chromosome Location	chr22:33218559-33218560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs107614	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs130290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs130293	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs130295	0.87[YRI][hapmap]
rs130301	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs130302	1.00[CHB][hapmap]
rs130305	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs130554	0.87[EUR][1000 genomes]
rs130558	0.85[EUR][1000 genomes]
rs135026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135028	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs135153	0.87[EUR][1000 genomes]
rs181425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242084	1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242087	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs25027	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158312	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs80267	0.85[EUR][1000 genomes]
rs80272	0.92[YRI][hapmap]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33201000-33227400	Weak transcription	Aorta	Aorta
2	chr22:33201200-33222800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr22:33201600-33226200	Weak transcription	NH-A	brain
4	chr22:33202000-33220000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr22:33203200-33223600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr22:33204600-33220200	Weak transcription	Brain Hippocampus Middle	brain
7	chr22:33204800-33227800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr22:33205200-33219800	Weak transcription	Brain Angular Gyrus	brain
9	chr22:33206400-33220800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr22:33206600-33219800	Strong transcription	Osteobl	bone
11	chr22:33206800-33224600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr22:33207000-33226200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr22:33211000-33221400	Genic enhancers	Adipose Nuclei	Adipose
14	chr22:33211000-33225600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr22:33211000-33225800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr22:33211000-33240400	Genic enhancers	Left Ventricle	heart
17	chr22:33211200-33218800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr22:33211400-33220600	Weak transcription	Fetal Kidney	kidney
19	chr22:33211800-33218600	Genic enhancers	Placenta	Placenta
20	chr22:33212000-33218600	Genic enhancers	Fetal Muscle Leg	muscle
21	chr22:33212000-33218800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr22:33212200-33219200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr22:33212400-33220800	Weak transcription	Fetal Intestine Large	intestine
24	chr22:33212600-33222600	Weak transcription	HSMMtube	muscle
25	chr22:33212600-33227000	Weak transcription	Liver	Liver
26	chr22:33213600-33227000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr22:33214400-33218600	Genic enhancers	Right Ventricle	heart
28	chr22:33214400-33220800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr22:33214800-33222600	Weak transcription	Fetal Lung	lung
30	chr22:33215000-33219200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr22:33215000-33219600	Weak transcription	Brain Substantia Nigra	brain
32	chr22:33215200-33219800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr22:33215200-33222800	Enhancers	Fetal Heart	heart
34	chr22:33215200-33225800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr22:33215400-33220800	Weak transcription	Fetal Intestine Small	intestine
36	chr22:33215400-33222800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr22:33215400-33225600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr22:33215600-33219200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr22:33215600-33222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr22:33215800-33218600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr22:33216000-33226800	Weak transcription	Fetal Thymus	thymus
42	chr22:33216400-33219200	Weak transcription	Psoas Muscle	Psoas
43	chr22:33216400-33220000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr22:33216400-33225600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr22:33216800-33219000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr22:33216800-33219600	Weak transcription	Esophagus	oesophagus
47	chr22:33216800-33220200	Weak transcription	Brain Anterior Caudate	brain
48	chr22:33216800-33223600	Weak transcription	Fetal Brain Male	brain
49	chr22:33217000-33219400	Weak transcription	NHDF-Ad	bronchial
50	chr22:33217200-33218600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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