Variant report

Variant	rs25027
Chromosome Location	chr22:33219453-33219454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33196424..33197160-chr22:33218794..33219602,2	MCF-7	breast:
2	chr22:32924662..32925344-chr22:33218691..33219849,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs107614	0.80[AMR][1000 genomes]
rs130290	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs130293	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs130301	0.80[AMR][1000 genomes]
rs130305	0.80[AMR][1000 genomes]
rs130554	0.89[EUR][1000 genomes]
rs130558	0.87[EUR][1000 genomes]
rs135026	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs135028	0.80[AMR][1000 genomes]
rs135153	0.89[EUR][1000 genomes]
rs171383	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181425	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242084	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242087	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73158312	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs80267	0.87[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33201000-33227400	Weak transcription	Aorta	Aorta
2	chr22:33201200-33222800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr22:33201600-33226200	Weak transcription	NH-A	brain
4	chr22:33202000-33220000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr22:33203200-33223600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr22:33204600-33220200	Weak transcription	Brain Hippocampus Middle	brain
7	chr22:33204800-33227800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr22:33205200-33219800	Weak transcription	Brain Angular Gyrus	brain
9	chr22:33206400-33220800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr22:33206600-33219800	Strong transcription	Osteobl	bone
11	chr22:33206800-33224600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr22:33207000-33226200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr22:33211000-33221400	Genic enhancers	Adipose Nuclei	Adipose
14	chr22:33211000-33225600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr22:33211000-33225800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr22:33211000-33240400	Genic enhancers	Left Ventricle	heart
17	chr22:33211400-33220600	Weak transcription	Fetal Kidney	kidney
18	chr22:33212400-33220800	Weak transcription	Fetal Intestine Large	intestine
19	chr22:33212600-33222600	Weak transcription	HSMMtube	muscle
20	chr22:33212600-33227000	Weak transcription	Liver	Liver
21	chr22:33213600-33227000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr22:33214400-33220800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr22:33214800-33222600	Weak transcription	Fetal Lung	lung
24	chr22:33215000-33219600	Weak transcription	Brain Substantia Nigra	brain
25	chr22:33215200-33219800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr22:33215200-33222800	Enhancers	Fetal Heart	heart
27	chr22:33215200-33225800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr22:33215400-33220800	Weak transcription	Fetal Intestine Small	intestine
29	chr22:33215400-33222800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr22:33215400-33225600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr22:33215600-33222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr22:33216000-33226800	Weak transcription	Fetal Thymus	thymus
33	chr22:33216400-33220000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr22:33216400-33225600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr22:33216800-33219600	Weak transcription	Esophagus	oesophagus
36	chr22:33216800-33220200	Weak transcription	Brain Anterior Caudate	brain
37	chr22:33216800-33223600	Weak transcription	Fetal Brain Male	brain
38	chr22:33217200-33222800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr22:33217400-33219600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr22:33217400-33221200	Enhancers	Stomach Smooth Muscle	stomach
41	chr22:33217400-33222600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr22:33217400-33226400	Weak transcription	Ovary	ovary
43	chr22:33217600-33220600	Weak transcription	Colon Smooth Muscle	Colon
44	chr22:33217600-33221200	Enhancers	Right Atrium	heart
45	chr22:33217600-33222600	Weak transcription	NHEK	skin
46	chr22:33217800-33222200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr22:33217800-33226000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr22:33217800-33229000	Weak transcription	NHLF	lung
49	chr22:33217800-33248600	Weak transcription	Gastric	stomach
50	chr22:33218200-33220200	Enhancers	Skeletal Muscle Female	skeletal muscle

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