Variant report

Variant	rs1350765
Chromosome Location	chr1:72860688-72860689
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1084442	0.89[AFR][1000 genomes]
rs1599333	0.89[AFR][1000 genomes]
rs1664370	0.89[AFR][1000 genomes]
rs17092663	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092672	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590946	0.89[AFR][1000 genomes]
rs2613472	0.89[AFR][1000 genomes]
rs2613474	0.89[AFR][1000 genomes]
rs2613477	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2815769	0.89[AFR][1000 genomes]
rs2815770	0.89[AFR][1000 genomes]
rs2815776	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs290694	0.89[AFR][1000 genomes]
rs290699	0.89[AFR][1000 genomes]
rs290700	0.89[AFR][1000 genomes]
rs482335	0.89[AFR][1000 genomes]
rs511331	0.89[AFR][1000 genomes]
rs782200	0.89[AFR][1000 genomes]
rs782201	0.89[AFR][1000 genomes]
rs782206	0.89[AFR][1000 genomes]
rs782209	0.89[AFR][1000 genomes]
rs782213	0.89[AFR][1000 genomes]
rs782217	0.89[AFR][1000 genomes]
rs782220	0.89[AFR][1000 genomes]
rs782241	0.83[AFR][1000 genomes]
rs782247	0.89[AFR][1000 genomes]
rs782248	0.89[AFR][1000 genomes]
rs782249	0.89[AFR][1000 genomes]
rs782250	0.89[AFR][1000 genomes]
rs782251	0.89[AFR][1000 genomes]
rs782253	0.89[AFR][1000 genomes]
rs782255	0.89[AFR][1000 genomes]
rs782256	0.89[AFR][1000 genomes]
rs782258	0.89[AFR][1000 genomes]
rs796699	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428454	chr1:72504469-72926256	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2757734	chr1:72742396-72886813	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2758939	chr1:72742396-72886813	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv830204	chr1:72749851-72938571	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv947113	chr1:72810737-72948614	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2422432	chr1:72821856-73148651	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3414158	chr1:72847980-72873293	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72859400-72861000	Enhancers	Dnd41	blood
2	chr1:72859800-72860800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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