Variant report

Variant	rs782209
Chromosome Location	chr1:72949239-72949240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1084442	1.00[AFR][1000 genomes]
rs1350765	0.89[AFR][1000 genomes]
rs1599333	1.00[AFR][1000 genomes]
rs1664370	1.00[AFR][1000 genomes]
rs17092663	0.94[AFR][1000 genomes]
rs17092672	0.94[AFR][1000 genomes]
rs17092859	1.00[AMR][1000 genomes]
rs2590946	1.00[AFR][1000 genomes]
rs2613472	1.00[AFR][1000 genomes]
rs2613474	1.00[AFR][1000 genomes]
rs2815769	1.00[AFR][1000 genomes]
rs2815770	1.00[AFR][1000 genomes]
rs290694	1.00[AFR][1000 genomes]
rs290699	1.00[AFR][1000 genomes]
rs290700	1.00[AFR][1000 genomes]
rs482335	1.00[AFR][1000 genomes]
rs511331	1.00[AFR][1000 genomes]
rs59937037	1.00[AMR][1000 genomes]
rs72949062	1.00[AMR][1000 genomes]
rs7417173	1.00[AMR][1000 genomes]
rs782200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs782201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs782206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs782213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs782217	1.00[AFR][1000 genomes]
rs782220	1.00[AFR][1000 genomes]
rs782241	0.94[AFR][1000 genomes]
rs782247	1.00[AFR][1000 genomes]
rs782248	1.00[AFR][1000 genomes]
rs782249	1.00[AFR][1000 genomes]
rs782250	1.00[AFR][1000 genomes]
rs782251	1.00[AFR][1000 genomes]
rs782253	1.00[AFR][1000 genomes]
rs782254	0.89[AFR][1000 genomes]
rs782255	1.00[AFR][1000 genomes]
rs782256	1.00[AFR][1000 genomes]
rs782258	1.00[AFR][1000 genomes]
rs796699	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422432	chr1:72821856-73148651	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv871873	chr1:72861847-72975877	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv870463	chr1:72861847-72995398	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv871758	chr1:72861847-72995398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv830215	chr1:72869049-73029787	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72947000-72950000	Enhancers	Thymus	Thymus
2	chr1:72947200-72950000	Enhancers	Dnd41	blood
3	chr1:72948400-72949800	Enhancers	Primary T cells from cord blood	blood
4	chr1:72948600-72949400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:72948600-72949400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr1:72948600-72950000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:72948600-72950600	Enhancers	HepG2	liver
8	chr1:72948800-72949800	Weak transcription	Fetal Lung	lung
9	chr1:72948800-72949800	Weak transcription	Fetal Thymus	thymus
10	chr1:72948800-72950400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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