Variant report
| Variant | rs782206 |
|---|---|
| Chromosome Location | chr1:72955357-72955358 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:72940829..72943302-chr1:72953115..72955886,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs1084442 | 1.00[AFR][1000 genomes] |
| rs1350765 | 0.89[AFR][1000 genomes] |
| rs1599333 | 1.00[AFR][1000 genomes] |
| rs1664370 | 1.00[AFR][1000 genomes] |
| rs17092663 | 0.94[AFR][1000 genomes] |
| rs17092672 | 0.94[AFR][1000 genomes] |
| rs17092859 | 1.00[AMR][1000 genomes] |
| rs2590946 | 1.00[AFR][1000 genomes] |
| rs2613472 | 1.00[AFR][1000 genomes] |
| rs2613474 | 1.00[AFR][1000 genomes] |
| rs2815769 | 1.00[AFR][1000 genomes] |
| rs2815770 | 1.00[AFR][1000 genomes] |
| rs290694 | 1.00[AFR][1000 genomes] |
| rs290699 | 1.00[AFR][1000 genomes] |
| rs290700 | 1.00[AFR][1000 genomes] |
| rs482335 | 1.00[AFR][1000 genomes] |
| rs511331 | 1.00[AFR][1000 genomes] |
| rs59937037 | 1.00[AMR][1000 genomes] |
| rs72949062 | 1.00[AMR][1000 genomes] |
| rs7417173 | 1.00[AMR][1000 genomes] |
| rs782200 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs782201 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs782209 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs782213 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs782217 | 1.00[AFR][1000 genomes] |
| rs782220 | 1.00[AFR][1000 genomes] |
| rs782241 | 0.94[AFR][1000 genomes] |
| rs782247 | 1.00[AFR][1000 genomes] |
| rs782248 | 1.00[AFR][1000 genomes] |
| rs782249 | 1.00[AFR][1000 genomes] |
| rs782250 | 1.00[AFR][1000 genomes] |
| rs782251 | 1.00[AFR][1000 genomes] |
| rs782253 | 1.00[AFR][1000 genomes] |
| rs782254 | 0.89[AFR][1000 genomes] |
| rs782255 | 1.00[AFR][1000 genomes] |
| rs782256 | 1.00[AFR][1000 genomes] |
| rs782258 | 1.00[AFR][1000 genomes] |
| rs796699 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422432 | chr1:72821856-73148651 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv871873 | chr1:72861847-72975877 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv870463 | chr1:72861847-72995398 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv871758 | chr1:72861847-72995398 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv830215 | chr1:72869049-73029787 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:72954800-72956200 | Enhancers | Fetal Lung | lung |
| 2 | chr1:72955200-72955800 | Enhancers | HUES64 Cell Line | embryonic stem cell |
