Variant report

Variant	rs1353048
Chromosome Location	chr4:28705790-28705791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:28699826..28702524-chr4:28704115..28706351,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10006501	0.95[EUR][1000 genomes]
rs10025594	0.95[EUR][1000 genomes]
rs10049898	0.86[EUR][1000 genomes]
rs16880747	0.86[EUR][1000 genomes]
rs16880752	0.86[EUR][1000 genomes]
rs16880765	0.86[EUR][1000 genomes]
rs16880791	0.87[EUR][1000 genomes]
rs16880850	0.87[EUR][1000 genomes]
rs16880983	1.00[EUR][1000 genomes]
rs28437303	0.86[EUR][1000 genomes]
rs28481307	0.95[EUR][1000 genomes]
rs28499239	0.86[EUR][1000 genomes]
rs28624859	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28640574	0.95[EUR][1000 genomes]
rs28774377	0.86[EUR][1000 genomes]
rs28846975	1.00[EUR][1000 genomes]
rs292017	0.86[EUR][1000 genomes]
rs292018	0.86[EUR][1000 genomes]
rs292019	0.86[EUR][1000 genomes]
rs34208776	0.80[AFR][1000 genomes]
rs4554063	0.95[EUR][1000 genomes]
rs59306547	0.87[EUR][1000 genomes]
rs6818548	0.86[EUR][1000 genomes]
rs6831370	0.91[EUR][1000 genomes]
rs73117637	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73119349	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73119350	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7654449	1.00[EUR][1000 genomes]
rs7663851	0.95[EUR][1000 genomes]
rs7674994	1.00[EUR][1000 genomes]
rs9985889	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757926	chr4:28543958-28839437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759239	chr4:28543958-28839437	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829894	chr4:28587323-28740840	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1848641	chr4:28588964-28760835	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv878782	chr4:28624265-28706757	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv34764	chr4:28632207-28722831	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2757050	chr4:28632207-28769118	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv433218	chr4:28641062-28732481	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv441865	chr4:28642333-28730824	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv34271	chr4:28642726-28754977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv878783	chr4:28680520-28843029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
12	nsv878784	chr4:28680520-29069894	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28705400-28707600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:28705600-28707000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:28705600-28707200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:28705600-28709400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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