Variant report

Variant	rs292019
Chromosome Location	chr4:28545862-28545863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10006501	0.91[EUR][1000 genomes]
rs10025594	0.91[EUR][1000 genomes]
rs10049898	1.00[EUR][1000 genomes]
rs11932333	0.84[EUR][1000 genomes]
rs11934051	0.84[EUR][1000 genomes]
rs11937136	0.84[EUR][1000 genomes]
rs11944289	0.84[EUR][1000 genomes]
rs1353048	0.86[EUR][1000 genomes]
rs16880694	0.81[EUR][1000 genomes]
rs16880747	0.91[EUR][1000 genomes]
rs16880752	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16880765	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16880791	0.83[EUR][1000 genomes]
rs16880850	0.83[EUR][1000 genomes]
rs16880983	0.86[EUR][1000 genomes]
rs2063401	0.84[EUR][1000 genomes]
rs28437303	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28481307	0.91[EUR][1000 genomes]
rs28499239	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28624859	0.86[EUR][1000 genomes]
rs28640574	0.91[EUR][1000 genomes]
rs28774377	0.82[EUR][1000 genomes]
rs28846975	0.86[EUR][1000 genomes]
rs292017	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs292018	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4554063	0.91[EUR][1000 genomes]
rs59306547	0.83[EUR][1000 genomes]
rs6818548	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6826494	0.84[EUR][1000 genomes]
rs6831370	0.87[EUR][1000 genomes]
rs6832871	0.84[EUR][1000 genomes]
rs6833935	0.84[EUR][1000 genomes]
rs73117637	0.86[EUR][1000 genomes]
rs73119349	0.86[EUR][1000 genomes]
rs73119350	0.86[EUR][1000 genomes]
rs7654449	0.86[EUR][1000 genomes]
rs7663851	0.91[EUR][1000 genomes]
rs7674276	0.84[EUR][1000 genomes]
rs7674994	0.86[EUR][1000 genomes]
rs9985889	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2757926	chr4:28543958-28839437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759239	chr4:28543958-28839437	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28539600-28555200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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