Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10049898	0.84[EUR][1000 genomes]
rs11932333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11934051	1.00[EUR][1000 genomes]
rs11936437	0.92[EUR][1000 genomes]
rs11937136	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11944289	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16880694	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16880747	0.84[EUR][1000 genomes]
rs16880752	0.84[EUR][1000 genomes]
rs16880765	0.84[EUR][1000 genomes]
rs16880791	0.84[EUR][1000 genomes]
rs16880850	0.84[EUR][1000 genomes]
rs2063401	1.00[EUR][1000 genomes]
rs28437303	0.84[EUR][1000 genomes]
rs28499239	0.84[EUR][1000 genomes]
rs292017	0.84[EUR][1000 genomes]
rs292018	0.84[EUR][1000 genomes]
rs292019	0.84[EUR][1000 genomes]
rs4479689	0.85[EUR][1000 genomes]
rs59306547	0.84[EUR][1000 genomes]
rs6818548	0.84[EUR][1000 genomes]
rs6826494	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6832871	1.00[EUR][1000 genomes]
rs6833935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9784519	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28500000-28520400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28517800-28518600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:28518000-28518600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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