Variant report
| Variant | rs6826494 |
|---|---|
| Chromosome Location | chr4:28540311-28540312 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10049898 | 0.84[EUR][1000 genomes] |
| rs11932333 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11934051 | 1.00[EUR][1000 genomes] |
| rs11936437 | 0.92[EUR][1000 genomes] |
| rs11937136 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11944289 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16880694 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs16880747 | 0.84[EUR][1000 genomes] |
| rs16880752 | 0.84[EUR][1000 genomes] |
| rs16880765 | 0.84[EUR][1000 genomes] |
| rs16880791 | 0.84[EUR][1000 genomes] |
| rs16880850 | 0.84[EUR][1000 genomes] |
| rs2063401 | 1.00[EUR][1000 genomes] |
| rs28437303 | 0.84[EUR][1000 genomes] |
| rs28499239 | 0.84[EUR][1000 genomes] |
| rs292017 | 0.84[EUR][1000 genomes] |
| rs292018 | 0.84[EUR][1000 genomes] |
| rs292019 | 0.84[EUR][1000 genomes] |
| rs4479689 | 0.85[EUR][1000 genomes] |
| rs59306547 | 0.84[EUR][1000 genomes] |
| rs6818548 | 0.84[EUR][1000 genomes] |
| rs6832871 | 1.00[EUR][1000 genomes] |
| rs6833935 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7674276 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9784519 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010133 | chr4:28273244-28642942 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014938 | chr4:28277683-28642942 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:28539600-28555200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
