Variant report

Variant	rs2063401
Chromosome Location	chr4:28482692-28482693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10049898	0.84[EUR][1000 genomes]
rs11932333	1.00[EUR][1000 genomes]
rs11934051	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11936437	0.92[EUR][1000 genomes]
rs11937136	1.00[EUR][1000 genomes]
rs11944289	1.00[EUR][1000 genomes]
rs16880694	0.96[EUR][1000 genomes]
rs16880747	0.84[EUR][1000 genomes]
rs16880752	0.84[EUR][1000 genomes]
rs16880765	0.84[EUR][1000 genomes]
rs16880791	0.84[EUR][1000 genomes]
rs16880850	0.84[EUR][1000 genomes]
rs28437303	0.84[EUR][1000 genomes]
rs28499239	0.84[EUR][1000 genomes]
rs292017	0.84[EUR][1000 genomes]
rs292018	0.84[EUR][1000 genomes]
rs292019	0.84[EUR][1000 genomes]
rs4479689	0.85[EUR][1000 genomes]
rs59306547	0.84[EUR][1000 genomes]
rs6818548	0.84[EUR][1000 genomes]
rs6826494	1.00[EUR][1000 genomes]
rs6832871	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6833935	1.00[EUR][1000 genomes]
rs7674276	1.00[EUR][1000 genomes]
rs9784519	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28476600-28484400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28481800-28485600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:28481800-28492200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:28482000-28483000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:28482000-28483000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:28482000-28483000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:28482000-28483000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:28482000-28483200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:28482000-28484400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:28482000-28484400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:28482200-28483200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:28482600-28484600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr4:28482600-28484600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr4:28482600-28485800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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