Variant report

Variant	rs1354854
Chromosome Location	chr1:209468681-209468682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209467592..209471534-chr1:209473372..209476439,3	MCF-7	breast:
2	chr1:209460952..209462722-chr1:209468358..209470837,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1021993	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1027821	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1027823	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1395749	0.81[AFR][1000 genomes]
rs1395751	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1395756	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1507341	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553622	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553623	0.83[AFR][1000 genomes]
rs1857966	0.84[CHB][hapmap]
rs2356722	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2660636	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2660640	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2660642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2660643	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2843168	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6661759	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs6674103	0.87[EUR][1000 genomes]
rs6674309	0.83[EUR][1000 genomes]
rs6685289	0.87[EUR][1000 genomes]
rs6685498	0.86[EUR][1000 genomes]
rs906347	0.83[CEU][hapmap];0.84[CHB][hapmap];0.86[EUR][1000 genomes]
rs906348	0.83[CEU][hapmap];0.94[CHB][hapmap];0.88[EUR][1000 genomes]
rs906349	0.86[EUR][1000 genomes]
rs906350	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs906351	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs925077	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs937874	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs950890	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv947378	chr1:209466803-209470268	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209465000-209469200	Weak transcription	Fetal Stomach	stomach
2	chr1:209465800-209469200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:209467200-209475800	Weak transcription	Fetal Lung	lung

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