Variant report

Variant	rs937874
Chromosome Location	chr1:209499381-209499382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1021993	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1027821	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1027823	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1354854	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1395749	0.86[AFR][1000 genomes]
rs1395750	0.90[AFR][1000 genomes]
rs1395751	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1395756	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1507341	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1542981	0.94[AFR][1000 genomes]
rs1553622	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1553623	0.85[AFR][1000 genomes]
rs2245283	0.86[AFR][1000 genomes]
rs2245287	0.86[AFR][1000 genomes]
rs2356722	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2489649	0.86[AFR][1000 genomes]
rs2660636	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2660637	0.82[AFR][1000 genomes]
rs2660640	0.93[EUR][1000 genomes]
rs2660642	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2660643	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2843168	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6661759	0.87[EUR][1000 genomes]
rs6674103	0.90[EUR][1000 genomes]
rs6674309	0.86[EUR][1000 genomes]
rs6685289	0.90[EUR][1000 genomes]
rs6685498	0.89[EUR][1000 genomes]
rs906347	0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs906348	0.95[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs906349	0.89[EUR][1000 genomes]
rs906350	0.80[CHB][hapmap];0.89[EUR][1000 genomes]
rs906351	0.89[EUR][1000 genomes]
rs925077	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs950890	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209493200-209500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:209496600-209499400	Enhancers	HMEC	breast
3	chr1:209496600-209499600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:209496600-209499800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:209496600-209499800	Enhancers	NHEK	skin
6	chr1:209496600-209500800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:209496800-209499400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:209497000-209500200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:209497000-209500400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:209498200-209499400	Enhancers	Colon Smooth Muscle	Colon
11	chr1:209498600-209499400	Enhancers	Esophagus	oesophagus
12	chr1:209498600-209500600	Enhancers	Fetal Brain Male	brain
13	chr1:209498800-209499400	Enhancers	Fetal Muscle Leg	muscle

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