Variant report

Variant	rs2660643
Chromosome Location	chr1:209472439-209472440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1021993	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1027821	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1027823	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1354854	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395749	0.93[AFR][1000 genomes]
rs1395750	0.85[AFR][1000 genomes]
rs1395751	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1395756	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1507341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542981	0.90[AFR][1000 genomes]
rs1553622	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553623	0.89[AFR][1000 genomes]
rs2245283	0.82[AFR][1000 genomes]
rs2245287	0.81[AFR][1000 genomes]
rs2489649	0.82[AFR][1000 genomes]
rs2660636	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2660637	0.86[AFR][1000 genomes]
rs2660640	0.92[EUR][1000 genomes]
rs2660642	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2843168	0.92[EUR][1000 genomes]
rs2843169	0.84[AFR][1000 genomes]
rs6661759	0.86[EUR][1000 genomes]
rs6674103	0.89[EUR][1000 genomes]
rs6674309	0.85[EUR][1000 genomes]
rs6685289	0.89[EUR][1000 genomes]
rs6685498	0.87[EUR][1000 genomes]
rs906347	0.87[EUR][1000 genomes]
rs906348	0.89[EUR][1000 genomes]
rs906349	0.87[EUR][1000 genomes]
rs906350	0.87[EUR][1000 genomes]
rs906351	0.87[EUR][1000 genomes]
rs925077	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs937874	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs950890	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209467200-209475800	Weak transcription	Fetal Lung	lung

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