Variant report

Variant	rs1355112
Chromosome Location	chr4:121183954-121183955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1355114	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1396534	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1396536	0.89[ASN][1000 genomes]
rs1508999	0.89[ASN][1000 genomes]
rs2036694	0.89[ASN][1000 genomes]
rs2662704	0.83[ASN][1000 genomes]
rs2662706	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2662708	0.82[ASN][1000 genomes]
rs2662709	0.83[ASN][1000 genomes]
rs2662723	0.83[ASN][1000 genomes]
rs2662724	0.84[ASN][1000 genomes]
rs2662730	0.89[ASN][1000 genomes]
rs2662732	0.89[ASN][1000 genomes]
rs2662735	0.80[ASN][1000 genomes]
rs2662738	0.80[ASN][1000 genomes]
rs2662739	0.80[ASN][1000 genomes]
rs2662742	0.89[ASN][1000 genomes]
rs2662747	0.80[ASN][1000 genomes]
rs2662760	0.81[ASN][1000 genomes]
rs2693757	0.86[ASN][1000 genomes]
rs2693760	0.85[CHB][hapmap]
rs2715957	0.81[ASN][1000 genomes]
rs2715967	0.89[ASN][1000 genomes]
rs2715978	0.83[ASN][1000 genomes]
rs2715988	0.80[ASN][1000 genomes]
rs2715989	0.80[ASN][1000 genomes]
rs2715992	0.85[CHB][hapmap]
rs2715999	0.95[ASN][1000 genomes]
rs2716008	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2716009	0.83[ASN][1000 genomes]
rs2716010	0.82[ASN][1000 genomes]
rs6534178	0.80[ASN][1000 genomes]
rs906716	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv1845528	chr4:121034480-121185834	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv595333	chr4:121093248-121440368	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1005240	chr4:121093285-121420997	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1002606	chr4:121145456-121194713	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121178800-121184800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:121183800-121186000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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